WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F47F6.1e Sequence Name  F47F6.1e
Length (nt)  1011   Chromosome Location  II: 1234175-1234429
Chromosome . Primary Identifier  II Chromosome Location . Start  1234175
Chromosome Location . End  1234429
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47F6.1e

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE51451 LIN-42, isoform e 36.6 336 Caenorhabditis elegans
 

Other

87 RNAi

WormBase ID
WBRNAi00059903
WBRNAi00027349
WBRNAi00027350
WBRNAi00025546
WBRNAi00047670
WBRNAi00086270
WBRNAi00086271
WBRNAi00025547
WBRNAi00099851
WBRNAi00015202
WBRNAi00015203
WBRNAi00099245
WBRNAi00099649
WBRNAi00099447
WBRNAi00078061
WBRNAi00059906
WBRNAi00075398
WBRNAi00086280
WBRNAi00086279
WBRNAi00086282
WBRNAi00086281
WBRNAi00086284
WBRNAi00086283
WBRNAi00086286
WBRNAi00086285
WBRNAi00086288
WBRNAi00086287
WBRNAi00086290
WBRNAi00086289
WBRNAi00086292

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F47F6.1e 1234175 1234429 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018572 lin-42 F47F6.1 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:F47F6.1e 1234175 1234429 -1
CDS:F47F6.1e 1234584 1234725 -1
CDS:F47F6.1e 1235662 1235751 -1
CDS:F47F6.1e 1236019 1236389 -1
CDS:F47F6.1e 1239949 1240101 -1

1 Sequence

Length
1011

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F47F6.1e.1 F47F6.1e.1 1011   II: 1234175-1240101