WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H17B01.4a.1 Sequence Name  H17B01.4a.1
Length (nt)  3041   Chromosome Location  II: 1489930-1500330
Chromosome . Primary Identifier  II Chromosome Location . Start  1489930
Chromosome Location . End  1500330 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H17B01.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019209 emc-1 H17B01.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H17B01.4a H17B01.4a 2841   II: 1490126-1490236

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H17B01.4a.1 1489930 1500330 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon41173   307   II: 1489930-1490236 Caenorhabditis elegans
Exon41174   314   II: 1491241-1491554 Caenorhabditis elegans
Exon41175   103   II: 1491693-1491795 Caenorhabditis elegans
Exon41176   302   II: 1492611-1492912 Caenorhabditis elegans
Exon41177   199   II: 1493842-1494040 Caenorhabditis elegans
Exon41178   70   II: 1494758-1494827 Caenorhabditis elegans
Exon41179   86   II: 1494997-1495082 Caenorhabditis elegans
Exon41181   253   II: 1495641-1495893 Caenorhabditis elegans
Exon41182   166   II: 1496308-1496473 Caenorhabditis elegans
Exon41183   93   II: 1496595-1496687 Caenorhabditis elegans
Exon41185   494   II: 1497875-1498368 Caenorhabditis elegans
Exon41186   153   II: 1499048-1499200 Caenorhabditis elegans
Exon41188   217   II: 1499252-1499468 Caenorhabditis elegans
Exon41190   69   II: 1499549-1499617 Caenorhabditis elegans
Exon41192   74   II: 1499777-1499850 Caenorhabditis elegans
Exon41195   141   II: 1500190-1500330 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H17B01.4a.1 1489930 1500330 -1

1 Sequence

Length
3041

1 Sequence Ontology Term

Identifier Name Description
transcript