WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:H17B01.4a Sequence Name  H17B01.4a
Length (nt)  2841   Chromosome Location  II: 1490126-1490236
Chromosome . Primary Identifier  II Chromosome Location . Start  1490126
Chromosome Location . End  1490236
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H17B01.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27186 EMC-1, isoform a 104.8 946 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00093606
WBRNAi00093600
WBRNAi00049424
WBRNAi00016276
WBRNAi00025804
WBRNAi00071771
WBRNAi00071117
WBRNAi00093613
WBRNAi00027389

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:H17B01.4a 1490126 1490236 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019209 emc-1 H17B01.4 Caenorhabditis elegans

16 Locations


Feature . Primary Identifier
Start End Strand
CDS:H17B01.4a 1490126 1490236 -1
CDS:H17B01.4a 1491241 1491554 -1
CDS:H17B01.4a 1491693 1491795 -1
CDS:H17B01.4a 1492611 1492912 -1
CDS:H17B01.4a 1493842 1494040 -1
CDS:H17B01.4a 1494758 1494827 -1
CDS:H17B01.4a 1494997 1495082 -1
CDS:H17B01.4a 1495641 1495893 -1
CDS:H17B01.4a 1496308 1496473 -1
CDS:H17B01.4a 1496595 1496687 -1
CDS:H17B01.4a 1497875 1498368 -1
CDS:H17B01.4a 1499048 1499200 -1
CDS:H17B01.4a 1499252 1499468 -1
CDS:H17B01.4a 1499549 1499617 -1
CDS:H17B01.4a 1499777 1499850 -1
CDS:H17B01.4a 1500190 1500326 -1

1 Sequence

Length
2841

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:H17B01.4a.1 H17B01.4a.1 3041   II: 1489930-1500330