WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y59C2A.2a.1 Sequence Name  Y59C2A.2a.1
Length (nt)  2497   Chromosome Location  II: 2192354-2204137
Chromosome . Primary Identifier  II Chromosome Location . Start  2192354
Chromosome Location . End  2204137 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y59C2A.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021985 Y59C2A.2 Y59C2A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y59C2A.2a Y59C2A.2a 1944   II: 2192882-2192994

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y59C2A.2a.1 2192354 2204137 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42480   641   II: 2192354-2192994 Caenorhabditis elegans
Exon42481   67   II: 2193694-2193760 Caenorhabditis elegans
Exon42483   135   II: 2193980-2194114 Caenorhabditis elegans
Exon42486   96   II: 2199296-2199391 Caenorhabditis elegans
Exon42487   233   II: 2199643-2199875 Caenorhabditis elegans
Exon42488   142   II: 2200775-2200916 Caenorhabditis elegans
Exon42489   246   II: 2200995-2201240 Caenorhabditis elegans
Exon42491   122   II: 2201704-2201825 Caenorhabditis elegans
Exon42492   91   II: 2201902-2201992 Caenorhabditis elegans
Exon42493   90   II: 2202119-2202208 Caenorhabditis elegans
Exon42494   122   II: 2202810-2202931 Caenorhabditis elegans
Exon42495   72   II: 2203082-2203153 Caenorhabditis elegans
Exon42496   100   II: 2203434-2203533 Caenorhabditis elegans
Exon42497   103   II: 2203597-2203699 Caenorhabditis elegans
Exon42498   110   II: 2203815-2203924 Caenorhabditis elegans
Exon42499   127   II: 2204011-2204137 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y59C2A.2a.1 2192354 2204137 -1

1 Sequence

Length
2497

1 Sequence Ontology Term

Identifier Name Description
transcript