WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22D2.1.1 Sequence Name  T22D2.1.1
Length (nt)  3171   Chromosome Location  II: 2443279-2450947
Chromosome . Primary Identifier  II Chromosome Location . Start  2443279
Chromosome Location . End  2450947 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22D2.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006882 vab-19 T22D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22D2.1 T22D2.1 3123   II: 2443292-2443556

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22D2.1.1 2443279 2450947 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42983   278   II: 2443279-2443556 Caenorhabditis elegans
Exon42984   149   II: 2443858-2444006 Caenorhabditis elegans
Exon42985   112   II: 2444105-2444216 Caenorhabditis elegans
Exon42986   102   II: 2444267-2444368 Caenorhabditis elegans
Exon42987   210   II: 2444902-2445111 Caenorhabditis elegans
Exon42988   146   II: 2445312-2445457 Caenorhabditis elegans
Exon42989   135   II: 2445507-2445641 Caenorhabditis elegans
Exon42990   167   II: 2446229-2446395 Caenorhabditis elegans
Exon42991   439   II: 2446446-2446884 Caenorhabditis elegans
Exon42992   119   II: 2447394-2447512 Caenorhabditis elegans
Exon42993   342   II: 2447570-2447911 Caenorhabditis elegans
Exon42994   84   II: 2448389-2448472 Caenorhabditis elegans
Exon42995   74   II: 2448528-2448601 Caenorhabditis elegans
Exon42996   95   II: 2448651-2448745 Caenorhabditis elegans
Exon42997   150   II: 2449058-2449207 Caenorhabditis elegans
Exon42998   99   II: 2449255-2449353 Caenorhabditis elegans
Exon42999   315   II: 2449663-2449977 Caenorhabditis elegans
Exon43000   155   II: 2450793-2450947 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22D2.1.1 2443279 2450947 1

1 Sequence

Length
3171

1 Sequence Ontology Term

Identifier Name Description
transcript