WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16C8.2.1 Sequence Name  C16C8.2.1
Length (nt)  2536   Chromosome Location  II: 3431282-3436512
Chromosome . Primary Identifier  II Chromosome Location . Start  3431282
Chromosome Location . End  3436512 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16C8.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015841 skpo-2 C16C8.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16C8.2 C16C8.2 2190   II: 3431575-3431632

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16C8.2.1 3431282 3436512 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon45219   351   II: 3431282-3431632 Caenorhabditis elegans
Exon45220   159   II: 3431938-3432096 Caenorhabditis elegans
Exon45221   118   II: 3432138-3432255 Caenorhabditis elegans
Exon45222   496   II: 3432308-3432803 Caenorhabditis elegans
Exon45223   106   II: 3433148-3433253 Caenorhabditis elegans
Exon45224   94   II: 3433307-3433400 Caenorhabditis elegans
Exon45225   94   II: 3433450-3433543 Caenorhabditis elegans
Exon45226   115   II: 3433601-3433715 Caenorhabditis elegans
Exon45227   155   II: 3433774-3433928 Caenorhabditis elegans
Exon45228   68   II: 3433986-3434053 Caenorhabditis elegans
Exon45229   220   II: 3434104-3434323 Caenorhabditis elegans
Exon45230   334   II: 3434366-3434699 Caenorhabditis elegans
Exon45232   115   II: 3434841-3434955 Caenorhabditis elegans
Exon45233   111   II: 3436402-3436512 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16C8.2.1 3431282 3436512 -1

1 Sequence

Length
2536

1 Sequence Ontology Term

Identifier Name Description
transcript