WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T12C9.3f.1 Sequence Name  T12C9.3f.1
Length (nt)  3702   Chromosome Location  II: 4444641-4453151
Chromosome . Primary Identifier  II Chromosome Location . Start  4444641
Chromosome Location . End  4453151 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T12C9.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006657 twk-2 T12C9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T12C9.3f T12C9.3f 3702   II: 4444641-4444998

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T12C9.3f.1 4444641 4453151 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47700   358   II: 4444641-4444998 Caenorhabditis elegans
Exon47710   116   II: 4445494-4445609 Caenorhabditis elegans
Exon47716   356   II: 4445978-4446333 Caenorhabditis elegans
Exon47722   125   II: 4446505-4446629 Caenorhabditis elegans
Exon47726   213   II: 4447055-4447267 Caenorhabditis elegans
Exon47732   140   II: 4447514-4447653 Caenorhabditis elegans
Exon47735   728   II: 4448630-4449357 Caenorhabditis elegans
Exon47744   112   II: 4449899-4450010 Caenorhabditis elegans
Exon47750   109   II: 4450061-4450169 Caenorhabditis elegans
Exon47756   135   II: 4450362-4450496 Caenorhabditis elegans
Exon47763   206   II: 4450757-4450962 Caenorhabditis elegans
Exon47769   112   II: 4451015-4451126 Caenorhabditis elegans
Exon47775   55   II: 4451343-4451397 Caenorhabditis elegans
Exon47781   73   II: 4451452-4451524 Caenorhabditis elegans
Exon47787   227   II: 4451639-4451865 Caenorhabditis elegans
Exon47793   188   II: 4452139-4452326 Caenorhabditis elegans
Exon47799   96   II: 4452373-4452468 Caenorhabditis elegans
Exon47805   88   II: 4452581-4452668 Caenorhabditis elegans
Exon47811   241   II: 4452723-4452963 Caenorhabditis elegans
Exon47817   24   II: 4453128-4453151 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T12C9.3f.1 4444641 4453151 -1

1 Sequence

Length
3702

1 Sequence Ontology Term

Identifier Name Description
transcript