WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34F11.9c.1 Sequence Name  C34F11.9c.1
Length (nt)  2240   Chromosome Location  II: 5214400-5225376
Chromosome . Primary Identifier  II Chromosome Location . Start  5214400
Chromosome Location . End  5225376 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34F11.9c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001101 dsh-1 C34F11.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F11.9c C34F11.9c 2109   II: 5214523-5214649

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.9c.1 5214400 5225376 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49633   250   II: 5214400-5214649 Caenorhabditis elegans
Exon49636   113   II: 5214932-5215044 Caenorhabditis elegans
Exon49644   167   II: 5215665-5215831 Caenorhabditis elegans
Exon49651   168   II: 5216124-5216291 Caenorhabditis elegans
Exon49659   237   II: 5216340-5216576 Caenorhabditis elegans
Exon49667   176   II: 5217015-5217190 Caenorhabditis elegans
Exon49675   241   II: 5217245-5217485 Caenorhabditis elegans
Exon49683   122   II: 5217533-5217654 Caenorhabditis elegans
Exon49692   76   II: 5218966-5219041 Caenorhabditis elegans
Exon49705   96   II: 5223503-5223598 Caenorhabditis elegans
Exon49710   218   II: 5224137-5224354 Caenorhabditis elegans
Exon49714   149   II: 5224409-5224557 Caenorhabditis elegans
Exon49718   98   II: 5225098-5225195 Caenorhabditis elegans
Exon49719   129   II: 5225248-5225376 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.9c.1 5214400 5225376 -1

1 Sequence

Length
2240

1 Sequence Ontology Term

Identifier Name Description
transcript