WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K05F1.6c.1 Sequence Name  K05F1.6c.1
Length (nt)  3325   Chromosome Location  II: 5782520-5787675
Chromosome . Primary Identifier  II Chromosome Location . Start  5782520
Chromosome Location . End  5787675 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K05F1.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019408 K05F1.6 K05F1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K05F1.6c K05F1.6c 2577   II: 5782948-5783195

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K05F1.6c.1 5782520 5787675 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon51427   374   II: 5782520-5782893 Caenorhabditis elegans
Exon51432   253   II: 5782943-5783195 Caenorhabditis elegans
Exon51436   228   II: 5783702-5783929 Caenorhabditis elegans
Exon51440   271   II: 5784061-5784331 Caenorhabditis elegans
Exon51443   135   II: 5784941-5785075 Caenorhabditis elegans
Exon51446   132   II: 5785119-5785250 Caenorhabditis elegans
Exon51450   131   II: 5785303-5785433 Caenorhabditis elegans
Exon51454   170   II: 5785482-5785651 Caenorhabditis elegans
Exon51458   110   II: 5785698-5785807 Caenorhabditis elegans
Exon51462   228   II: 5785854-5786081 Caenorhabditis elegans
Exon51466   251   II: 5786187-5786437 Caenorhabditis elegans
Exon51470   370   II: 5786486-5786855 Caenorhabditis elegans
Exon51474   131   II: 5786907-5787037 Caenorhabditis elegans
Exon51478   79   II: 5787084-5787162 Caenorhabditis elegans
Exon51483   462   II: 5787214-5787675 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K05F1.6c.1 5782520 5787675 1

1 Sequence

Length
3325

1 Sequence Ontology Term

Identifier Name Description
transcript