WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T24H7.5a.2 Sequence Name  T24H7.5a.2
Length (nt)  3869   Chromosome Location  II: 6235472-6244287
Chromosome . Primary Identifier  II Chromosome Location . Start  6235472
Chromosome Location . End  6244287 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T24H7.5a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020784 tat-4 T24H7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T24H7.5a T24H7.5a 3639   II: 6236885-6236939

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T24H7.5a.2 6235472 6244287 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon52590   34   II: 6235472-6235505 Caenorhabditis elegans
Exon52592   197   II: 6236743-6236939 Caenorhabditis elegans
Exon52596   293   II: 6236986-6237278 Caenorhabditis elegans
Exon52600   282   II: 6237328-6237609 Caenorhabditis elegans
Exon52604   301   II: 6237659-6237959 Caenorhabditis elegans
Exon52608   126   II: 6238145-6238270 Caenorhabditis elegans
Exon52612   245   II: 6238314-6238558 Caenorhabditis elegans
Exon52616   151   II: 6238612-6238762 Caenorhabditis elegans
Exon52620   294   II: 6238809-6239102 Caenorhabditis elegans
Exon52624   225   II: 6239150-6239374 Caenorhabditis elegans
Exon52628   443   II: 6241298-6241740 Caenorhabditis elegans
Exon52632   180   II: 6241796-6241975 Caenorhabditis elegans
Exon52638   97   II: 6242529-6242625 Caenorhabditis elegans
Exon52642   169   II: 6242668-6242836 Caenorhabditis elegans
Exon52646   103   II: 6243033-6243135 Caenorhabditis elegans
Exon52650   556   II: 6243183-6243738 Caenorhabditis elegans
Exon52656   173   II: 6244115-6244287 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T24H7.5a.2 6235472 6244287 -1

1 Sequence

Length
3869

1 Sequence Ontology Term

Identifier Name Description
transcript