WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04A2.7c.1 Sequence Name  C04A2.7c.1
Length (nt)  3178   Chromosome Location  II: 6853461-6858288
Chromosome . Primary Identifier  II Chromosome Location . Start  6853461
Chromosome Location . End  6858288 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04A2.7c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001023 dnj-5 C04A2.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04A2.7c C04A2.7c 2739   II: 6853884-6853990

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.7c.1 6853461 6858288 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54783   530   II: 6853461-6853990 Caenorhabditis elegans
Exon54784   103   II: 6854041-6854143 Caenorhabditis elegans
Exon54788   72   II: 6854194-6854265 Caenorhabditis elegans
Exon54794   102   II: 6855253-6855354 Caenorhabditis elegans
Exon54798   168   II: 6855403-6855570 Caenorhabditis elegans
Exon54802   117   II: 6855617-6855733 Caenorhabditis elegans
Exon54806   452   II: 6855785-6856236 Caenorhabditis elegans
Exon54810   183   II: 6856283-6856465 Caenorhabditis elegans
Exon54814   367   II: 6856509-6856875 Caenorhabditis elegans
Exon54818   236   II: 6856962-6857197 Caenorhabditis elegans
Exon54822   211   II: 6857250-6857460 Caenorhabditis elegans
Exon54824   144   II: 6857506-6857649 Caenorhabditis elegans
Exon54830   168   II: 6857702-6857869 Caenorhabditis elegans
Exon54834   203   II: 6857919-6858121 Caenorhabditis elegans
Exon54838   122   II: 6858167-6858288 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.7c.1 6853461 6858288 -1

1 Sequence

Length
3178

1 Sequence Ontology Term

Identifier Name Description
transcript