WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E04F6.11a.4 Sequence Name  E04F6.11a.4
Length (nt)  3688   Chromosome Location  II: 7217943-7225367
Chromosome . Primary Identifier  II Chromosome Location . Start  7217943
Chromosome Location . End  7225367 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E04F6.11a.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E04F6.11a E04F6.11a 3006   II: 7218412-7218478

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:E04F6.11a.4 7217943 7225367 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56254   536   II: 7217943-7218478 Caenorhabditis elegans
Exon56265   245   II: 7218529-7218773 Caenorhabditis elegans
Exon56276   198   II: 7218842-7219039 Caenorhabditis elegans
Exon56288   87   II: 7219172-7219258 Caenorhabditis elegans
Exon56300   105   II: 7219304-7219408 Caenorhabditis elegans
Exon56315   92   II: 7219732-7219823 Caenorhabditis elegans
Exon56326   209   II: 7219878-7220086 Caenorhabditis elegans
Exon56338   217   II: 7220133-7220349 Caenorhabditis elegans
Exon56349   253   II: 7220399-7220651 Caenorhabditis elegans
Exon56361   279   II: 7220700-7220978 Caenorhabditis elegans
Exon56373   192   II: 7221032-7221223 Caenorhabditis elegans
Exon56385   187   II: 7221271-7221457 Caenorhabditis elegans
Exon56397   374   II: 7221503-7221876 Caenorhabditis elegans
Exon56409   266   II: 7221931-7222196 Caenorhabditis elegans
Exon56421   120   II: 7222387-7222506 Caenorhabditis elegans
Exon56433   76   II: 7222561-7222636 Caenorhabditis elegans
Exon56446   96   II: 7222959-7223054 Caenorhabditis elegans
Exon56458   95   II: 7225154-7225248 Caenorhabditis elegans
Exon56466   61   II: 7225307-7225367 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:E04F6.11a.4 7217943 7225367 -1

1 Sequence

Length
3688

1 Sequence Ontology Term

Identifier Name Description
transcript