WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:E04F6.11a Sequence Name  E04F6.11a
Length (nt)  3006   Chromosome Location  II: 7218412-7218478
Chromosome . Primary Identifier  II Chromosome Location . Start  7218412
Chromosome Location . End  7218478
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E04F6.11a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27906 CLH-3, isoform a 110.8 1001 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00001831
WBRNAi00043676
WBRNAi00012687
WBRNAi00007198
WBRNAi00077551

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:E04F6.11a 7218412 7218478 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans

17 Locations


Feature . Primary Identifier
Start End Strand
CDS:E04F6.11a 7218412 7218478 -1
CDS:E04F6.11a 7218529 7218773 -1
CDS:E04F6.11a 7218842 7219039 -1
CDS:E04F6.11a 7219172 7219258 -1
CDS:E04F6.11a 7219304 7219408 -1
CDS:E04F6.11a 7219732 7219823 -1
CDS:E04F6.11a 7219878 7220086 -1
CDS:E04F6.11a 7220133 7220349 -1
CDS:E04F6.11a 7220399 7220651 -1
CDS:E04F6.11a 7220700 7220978 -1
CDS:E04F6.11a 7221032 7221223 -1
CDS:E04F6.11a 7221271 7221457 -1
CDS:E04F6.11a 7221503 7221876 -1
CDS:E04F6.11a 7221931 7222196 -1
CDS:E04F6.11a 7222387 7222506 -1
CDS:E04F6.11a 7222561 7222636 -1
CDS:E04F6.11a 7222959 7222997 -1

1 Sequence

Length
3006

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:E04F6.11a.3 E04F6.11a.3 3702   II: 7217943-7225662
Transcript:E04F6.11a.4 E04F6.11a.4 3688   II: 7217943-7225367
Transcript:E04F6.11a.2 E04F6.11a.2 3800   II: 7217943-7225914
Transcript:E04F6.11a.1 E04F6.11a.1 3532   II: 7217943-7223054