WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1290.2a.1 Sequence Name  ZK1290.2a.1
Length (nt)  1828   Chromosome Location  II: 7549335-7551983
Chromosome . Primary Identifier  II Chromosome Location . Start  7549335
Chromosome Location . End  7551983 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1290.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006600 tph-1 ZK1290.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1290.2a ZK1290.2a 1599   II: 7549358-7549443

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.2a.1 7549335 7551983 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57371   109   II: 7549335-7549443 Caenorhabditis elegans
Exon57374   100   II: 7549818-7549917 Caenorhabditis elegans
Exon57376   352   II: 7549958-7550309 Caenorhabditis elegans
Exon57377   104   II: 7550352-7550455 Caenorhabditis elegans
Exon57379   68   II: 7550497-7550564 Caenorhabditis elegans
Exon57381   90   II: 7550622-7550711 Caenorhabditis elegans
Exon57383   107   II: 7550763-7550869 Caenorhabditis elegans
Exon57385   136   II: 7550917-7551052 Caenorhabditis elegans
Exon57387   127   II: 7551099-7551225 Caenorhabditis elegans
Exon57389   269   II: 7551272-7551540 Caenorhabditis elegans
Exon57394   366   II: 7551618-7551983 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.2a.1 7549335 7551983 1

1 Sequence

Length
1828

1 Sequence Ontology Term

Identifier Name Description
transcript