WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:ZK1290.2a Sequence Name  ZK1290.2a
Length (nt)  1599   Chromosome Location  II: 7549358-7549443
Chromosome . Primary Identifier  II Chromosome Location . Start  7549358
Chromosome Location . End  7549443
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1290.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE39457 TPH-1, isoform a 60.8 532 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00059211
WBRNAi00021865
WBRNAi00027046
WBRNAi00027047
WBRNAi00027880
WBRNAi00114357
WBRNAi00027556
WBRNAi00102730
WBRNAi00114348

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:ZK1290.2a 7549358 7549443 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006600 tph-1 ZK1290.2 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:ZK1290.2a 7549358 7549443 1
CDS:ZK1290.2a 7549818 7549917 1
CDS:ZK1290.2a 7549958 7550309 1
CDS:ZK1290.2a 7550352 7550455 1
CDS:ZK1290.2a 7550497 7550564 1
CDS:ZK1290.2a 7550622 7550711 1
CDS:ZK1290.2a 7550763 7550869 1
CDS:ZK1290.2a 7550917 7551052 1
CDS:ZK1290.2a 7551099 7551225 1
CDS:ZK1290.2a 7551272 7551540 1
CDS:ZK1290.2a 7551618 7551777 1

1 Sequence

Length
1599

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:ZK1290.2a.1 ZK1290.2a.1 1828   II: 7549335-7551983