WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F10B5.7.1 Sequence Name  F10B5.7.1
Length (nt)  5530   Chromosome Location  II: 8162465-8168651
Chromosome . Primary Identifier  II Chromosome Location . Start  8162465
Chromosome Location . End  8168651 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F10B5.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004510 rrf-3 F10B5.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F10B5.7 F10B5.7 5298   II: 8162558-8162625

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F10B5.7.1 8162465 8168651 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon59368   161   II: 8162465-8162625 Caenorhabditis elegans
Exon59369   610   II: 8162681-8163290 Caenorhabditis elegans
Exon59370   236   II: 8163337-8163572 Caenorhabditis elegans
Exon59371   114   II: 8163620-8163733 Caenorhabditis elegans
Exon59372   358   II: 8163784-8164141 Caenorhabditis elegans
Exon59373   820   II: 8164187-8165006 Caenorhabditis elegans
Exon59374   272   II: 8165054-8165325 Caenorhabditis elegans
Exon59375   242   II: 8165371-8165612 Caenorhabditis elegans
Exon59376   212   II: 8165655-8165866 Caenorhabditis elegans
Exon59377   688   II: 8165913-8166600 Caenorhabditis elegans
Exon59378   724   II: 8166649-8167372 Caenorhabditis elegans
Exon59379   458   II: 8167417-8167874 Caenorhabditis elegans
Exon59380   106   II: 8167920-8168025 Caenorhabditis elegans
Exon59381   192   II: 8168077-8168268 Caenorhabditis elegans
Exon59382   337   II: 8168315-8168651 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F10B5.7.1 8162465 8168651 1

1 Sequence

Length
5530

1 Sequence Ontology Term

Identifier Name Description
transcript