WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F44G4.8a.1 Sequence Name  F44G4.8a.1
Length (nt)  4510   Chromosome Location  II: 9005796-9019798
Chromosome . Primary Identifier  II Chromosome Location . Start  9005796
Chromosome Location . End  9019798 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F44G4.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009717 dep-1 F44G4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F44G4.8a F44G4.8a 4104   II: 9006171-9006311

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F44G4.8a.1 9005796 9019798 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon62350   516   II: 9005796-9006311 Caenorhabditis elegans
Exon62352   136   II: 9006576-9006711 Caenorhabditis elegans
Exon62354   230   II: 9006765-9006994 Caenorhabditis elegans
Exon62356   451   II: 9007043-9007493 Caenorhabditis elegans
Exon62359   357   II: 9007703-9008059 Caenorhabditis elegans
Exon62360   118   II: 9009074-9009191 Caenorhabditis elegans
Exon62361   256   II: 9015415-9015670 Caenorhabditis elegans
Exon62362   76   II: 9015749-9015824 Caenorhabditis elegans
Exon62363   397   II: 9016356-9016752 Caenorhabditis elegans
Exon62364   652   II: 9016798-9017449 Caenorhabditis elegans
Exon62365   148   II: 9017530-9017677 Caenorhabditis elegans
Exon62366   155   II: 9017724-9017878 Caenorhabditis elegans
Exon62367   159   II: 9018007-9018165 Caenorhabditis elegans
Exon62368   143   II: 9018326-9018468 Caenorhabditis elegans
Exon62369   196   II: 9018514-9018709 Caenorhabditis elegans
Exon62370   163   II: 9018754-9018916 Caenorhabditis elegans
Exon62371   99   II: 9019382-9019480 Caenorhabditis elegans
Exon62372   258   II: 9019541-9019798 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F44G4.8a.1 9005796 9019798 -1

1 Sequence

Length
4510

1 Sequence Ontology Term

Identifier Name Description
transcript