WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F44G4.8a Sequence Name  F44G4.8a
Length (nt)  4104   Chromosome Location  II: 9006171-9006311
Chromosome . Primary Identifier  II Chromosome Location . Start  9006171
Chromosome Location . End  9006311
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F44G4.8a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE03335 DEP-1, isoform a 152.9 1367 Caenorhabditis elegans
 

Other

10 RNAi

WormBase ID
WBRNAi00047344
WBRNAi00078481
WBRNAi00014972
WBRNAi00109613
WBRNAi00078480
WBRNAi00032270
WBRNAi00109225
WBRNAi00109322
WBRNAi00109516
WBRNAi00109419

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F44G4.8a 9006171 9006311 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009717 dep-1 F44G4.8 Caenorhabditis elegans

18 Locations


Feature . Primary Identifier
Start End Strand
CDS:F44G4.8a 9006171 9006311 -1
CDS:F44G4.8a 9006576 9006711 -1
CDS:F44G4.8a 9006765 9006994 -1
CDS:F44G4.8a 9007043 9007493 -1
CDS:F44G4.8a 9007703 9008059 -1
CDS:F44G4.8a 9009074 9009191 -1
CDS:F44G4.8a 9015415 9015670 -1
CDS:F44G4.8a 9015749 9015824 -1
CDS:F44G4.8a 9016356 9016752 -1
CDS:F44G4.8a 9016798 9017449 -1
CDS:F44G4.8a 9017530 9017677 -1
CDS:F44G4.8a 9017724 9017878 -1
CDS:F44G4.8a 9018007 9018165 -1
CDS:F44G4.8a 9018326 9018468 -1
CDS:F44G4.8a 9018514 9018709 -1
CDS:F44G4.8a 9018754 9018916 -1
CDS:F44G4.8a 9019382 9019480 -1
CDS:F44G4.8a 9019541 9019767 -1

1 Sequence

Length
4104

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F44G4.8a.1 F44G4.8a.1 4510   II: 9005796-9019798