WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1k.1 Sequence Name  C09D8.1k.1
Length (nt)  6213   Chromosome Location  II: 10975539-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10975539
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1k C09D8.1k 6213   II: 10975539-10975674

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1k.1 10975539 11011782 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67515   136   II: 10975539-10975674 Caenorhabditis elegans
Exon67525   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67531   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67537   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67551   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67561   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67571   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67586   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67596   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67606   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67616   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67626   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67636   30   II: 10986071-10986100 Caenorhabditis elegans
Exon67657   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67668   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67679   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67690   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67701   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67713   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67729   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67742   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67757   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67771   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67785   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67799   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67813   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67827   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67836   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1k.1 10975539 11011782 1

1 Sequence

Length
6213

1 Sequence Ontology Term

Identifier Name Description
transcript