WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1a.1 Sequence Name  C09D8.1a.1
Length (nt)  7008   Chromosome Location  II: 10975539-11012247
Chromosome . Primary Identifier  II Chromosome Location . Start  10975539
Chromosome Location . End  11012247 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1a C09D8.1a 6543   II: 10975539-10975674

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1a.1 10975539 11012247 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67517   136   II: 10975539-10975674 Caenorhabditis elegans
Exon67521   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67527   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67533   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67545   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67555   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67565   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67580   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67590   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67600   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67610   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67620   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67630   360   II: 10985677-10986036 Caenorhabditis elegans
Exon67650   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67661   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67672   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67683   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67694   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67706   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67720   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67733   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67747   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67761   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67775   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67789   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67803   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67817   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67843   576   II: 11011672-11012247 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1a.1 10975539 11012247 1

1 Sequence

Length
7008

1 Sequence Ontology Term

Identifier Name Description
transcript