WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1m.1 Sequence Name  C09D8.1m.1
Length (nt)  6199   Chromosome Location  II: 10983032-11012243
Chromosome . Primary Identifier  II Chromosome Location . Start  10983032
Chromosome Location . End  11012243 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1m.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1m C09D8.1m 5700   II: 10983070-10983217

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1m.1 10983032 11012243 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67542   186   II: 10983032-10983217 Caenorhabditis elegans
Exon67553   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67563   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67573   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67579   72   II: 10984202-10984273 Caenorhabditis elegans
Exon67588   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67598   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67608   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67618   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67628   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67638   30   II: 10986071-10986100 Caenorhabditis elegans
Exon67659   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67670   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67681   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67692   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67703   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67715   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67731   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67744   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67759   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67773   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67787   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67801   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67815   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67829   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67841   572   II: 11011672-11012243 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1m.1 10983032 11012243 1

1 Sequence

Length
6199

1 Sequence Ontology Term

Identifier Name Description
transcript