WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1d.1 Sequence Name  C09D8.1d.1
Length (nt)  6030   Chromosome Location  II: 10983070-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10983070
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1d C09D8.1d 6030   II: 10983070-10983217

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1d.1 10983070 11011782 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67543   148   II: 10983070-10983217 Caenorhabditis elegans
Exon67546   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67556   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67566   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67575   72   II: 10984202-10984273 Caenorhabditis elegans
Exon67581   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67591   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67601   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67611   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67621   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67631   360   II: 10985677-10986036 Caenorhabditis elegans
Exon67652   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67663   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67674   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67685   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67696   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67708   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67723   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67736   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67750   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67764   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67778   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67792   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67806   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67820   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67831   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1d.1 10983070 11011782 1

1 Sequence

Length
6030

1 Sequence Ontology Term

Identifier Name Description
transcript