WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38E10A.6a.1 Sequence Name  Y38E10A.6a.1
Length (nt)  4229   Chromosome Location  II: 12582179-12603680
Chromosome . Primary Identifier  II Chromosome Location . Start  12582179
Chromosome Location . End  12603680 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38E10A.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012584 ceh-100 Y38E10A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38E10A.6a Y38E10A.6a 4032   II: 12582376-12582459

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38E10A.6a.1 12582179 12603680 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon71930   281   II: 12582179-12582459 Caenorhabditis elegans
Exon71931   75   II: 12583454-12583528 Caenorhabditis elegans
Exon71933   531   II: 12584502-12585032 Caenorhabditis elegans
Exon71935   174   II: 12586213-12586386 Caenorhabditis elegans
Exon71937   762   II: 12587239-12588000 Caenorhabditis elegans
Exon71939   174   II: 12589036-12589209 Caenorhabditis elegans
Exon71941   324   II: 12590573-12590896 Caenorhabditis elegans
Exon71943   174   II: 12591890-12592063 Caenorhabditis elegans
Exon71945   162   II: 12593010-12593171 Caenorhabditis elegans
Exon71947   120   II: 12593320-12593439 Caenorhabditis elegans
Exon71949   135   II: 12594251-12594385 Caenorhabditis elegans
Exon71951   174   II: 12595077-12595250 Caenorhabditis elegans
Exon71953   171   II: 12596133-12596303 Caenorhabditis elegans
Exon71955   120   II: 12596451-12596570 Caenorhabditis elegans
Exon71957   240   II: 12598091-12598330 Caenorhabditis elegans
Exon71959   174   II: 12600791-12600964 Caenorhabditis elegans
Exon71961   186   II: 12602099-12602284 Caenorhabditis elegans
Exon71963   252   II: 12603429-12603680 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38E10A.6a.1 12582179 12603680 -1

1 Sequence

Length
4229

1 Sequence Ontology Term

Identifier Name Description
transcript