WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54E2A.2 Sequence Name  Y54E2A.2
Length (nt)  1158   Chromosome Location  II: 14747909-14748053
Chromosome . Primary Identifier  II Chromosome Location . Start  14747909
Chromosome Location . End  14748053
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E2A.2

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE20301 SMG-9 43.8 385 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00057371
WBRNAi00022488
WBRNAi00037470

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y54E2A.2 14747909 14748053 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013188 smg-9 Y54E2A.2 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y54E2A.2 14747909 14748053 -1
CDS:Y54E2A.2 14748868 14749174 -1
CDS:Y54E2A.2 14749797 14749965 -1
CDS:Y54E2A.2 14751117 14751422 -1
CDS:Y54E2A.2 14752259 14752489 -1

1 Sequence

Length
1158

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54E2A.2.4 Y54E2A.2.4 1628   II: 14746890-14752495
Transcript:Y54E2A.2.2 Y54E2A.2.2 1935   II: 14746890-14752849
Transcript:Y54E2A.2.3 Y54E2A.2.3 1637   II: 14746893-14752498
Transcript:Y54E2A.2.1 Y54E2A.2.1 1274   II: 14747793-14752489