WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E2A.1.1 Sequence Name  Y54E2A.1.1
Length (nt)  1953   Chromosome Location  II: 14734405-14739243
Chromosome . Primary Identifier  II Chromosome Location . Start  14734405
Chromosome Location . End  14739243 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E2A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013187 npr-34 Y54E2A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E2A.1 Y54E2A.1 1842   II: 14734510-14734627

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E2A.1.1 14734405 14739243 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon75977   223   II: 14734405-14734627 Caenorhabditis elegans
Exon75978   96   II: 14735275-14735370 Caenorhabditis elegans
Exon75979   108   II: 14735414-14735521 Caenorhabditis elegans
Exon75980   242   II: 14735566-14735807 Caenorhabditis elegans
Exon75981   255   II: 14736074-14736328 Caenorhabditis elegans
Exon75982   160   II: 14737181-14737340 Caenorhabditis elegans
Exon75983   110   II: 14737391-14737500 Caenorhabditis elegans
Exon75984   244   II: 14737559-14737802 Caenorhabditis elegans
Exon75985   233   II: 14737850-14738082 Caenorhabditis elegans
Exon75986   135   II: 14738128-14738262 Caenorhabditis elegans
Exon75987   147   II: 14739097-14739243 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E2A.1.1 14734405 14739243 -1

1 Sequence

Length
1953

1 Sequence Ontology Term

Identifier Name Description
transcript