WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E2A.4a.1 Sequence Name  Y54E2A.4a.1
Length (nt)  6513   Chromosome Location  II: 14754622-14778149
Chromosome . Primary Identifier  II Chromosome Location . Start  14754622
Chromosome Location . End  14778149 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E2A.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013189 Y54E2A.4 Y54E2A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E2A.4a Y54E2A.4a 6054   II: 14754669-14754705

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E2A.4a.1 14754622 14778149 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon76015   84   II: 14754622-14754705 Caenorhabditis elegans
Exon76016   221   II: 14754765-14754985 Caenorhabditis elegans
Exon76017   198   II: 14755033-14755230 Caenorhabditis elegans
Exon76021   1103   II: 14757918-14759020 Caenorhabditis elegans
Exon76022   485   II: 14760382-14760866 Caenorhabditis elegans
Exon76023   391   II: 14768352-14768742 Caenorhabditis elegans
Exon76025   511   II: 14769625-14770135 Caenorhabditis elegans
Exon76027   1666   II: 14770197-14771862 Caenorhabditis elegans
Exon76032   814   II: 14773764-14774577 Caenorhabditis elegans
Exon76035   373   II: 14775296-14775668 Caenorhabditis elegans
Exon76038   167   II: 14776529-14776695 Caenorhabditis elegans
Exon76043   500   II: 14777650-14778149 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E2A.4a.1 14754622 14778149 1

1 Sequence

Length
6513

1 Sequence Ontology Term

Identifier Name Description
transcript