WormMine: Gene WBGene00044729

• WormBase Gene ID: WBGene00044729
• Gene Name: Y53F4B.46
• Sequence Name: Y53F4B.46
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by dpy-21 and flcn-1 based on RNA-seq and microarray studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 278

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044729

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

10 Allele

• gk963801
• gk963053
• gk962684
• gk963297
• gk545173
• gk358987
• gk583627
• WBVar01563579
• gk692380
• gk898258

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044729
• Start: 15117686
• End: 15117963
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_15117964..15118281
• Length (nt): 318
• Chromosome Location: II: 15117964-15118281
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_upregulated
	Transcripts that showed significantly depleted expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_depleted
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_downregulated
	Transcripts that showed significantly increased expression in RB1035[flcn-1(ok975)] comparing to in N2 at young adult stage.	Agilent microarray raw data were processed and quantile normalized with the marray package from the Bioconductor project. Fold change statistics and Students t-test were used to create lists of candidates for differential gene expression.	WBPaper00042236:flcn-1(ok975)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044729
• Start: 15117686
• End: 15117963
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 278

1 Sequence Ontology Term