WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F13B10.1a.2 Sequence Name  F13B10.1a.2
Length (nt)  3498   Chromosome Location  III: 3869590-3891460
Chromosome . Primary Identifier  III Chromosome Location . Start  3869590
Chromosome Location . End  3891460 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1a F13B10.1a 2793   III: 3870183-3870277

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1a.2 3869590 3891460 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon84011   688   III: 3869590-3870277 Caenorhabditis elegans
Exon84021   118   III: 3870326-3870443 Caenorhabditis elegans
Exon84035   1035   III: 3870600-3871634 Caenorhabditis elegans
Exon84049   115   III: 3880116-3880230 Caenorhabditis elegans
Exon84059   378   III: 3880279-3880656 Caenorhabditis elegans
Exon84069   119   III: 3880957-3881075 Caenorhabditis elegans
Exon84079   231   III: 3881123-3881353 Caenorhabditis elegans
Exon84089   375   III: 3881631-3882005 Caenorhabditis elegans
Exon84099   241   III: 3882307-3882547 Caenorhabditis elegans
Exon84114   107   III: 3890925-3891031 Caenorhabditis elegans
Exon84118   91   III: 3891370-3891460 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F13B10.1a.2 3869590 3891460 -1

1 Sequence

Length
3498

1 Sequence Ontology Term

Identifier Name Description
transcript