WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C9.5.1 Sequence Name  F52C9.5.1
Length (nt)  2054   Chromosome Location  III: 5302218-5306351
Chromosome . Primary Identifier  III Chromosome Location . Start  5302218
Chromosome Location . End  5306351 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018675 F52C9.5 F52C9.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.5 F52C9.5 1938   III: 5302218-5302351

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.5.1 5302218 5306351 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88404   134   III: 5302218-5302351 Caenorhabditis elegans
Exon88405   127   III: 5302420-5302546 Caenorhabditis elegans
Exon88406   133   III: 5302597-5302729 Caenorhabditis elegans
Exon88407   161   III: 5302857-5303017 Caenorhabditis elegans
Exon88408   408   III: 5303067-5303474 Caenorhabditis elegans
Exon88409   164   III: 5304001-5304164 Caenorhabditis elegans
Exon88410   323   III: 5304211-5304533 Caenorhabditis elegans
Exon88411   134   III: 5304725-5304858 Caenorhabditis elegans
Exon88412   145   III: 5305318-5305462 Caenorhabditis elegans
Exon88415   325   III: 5306027-5306351 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.5.1 5302218 5306351 1

1 Sequence

Length
2054

1 Sequence Ontology Term

Identifier Name Description
transcript