WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:W06F12.1d Sequence Name  W06F12.1d
Length (nt)  1806   Chromosome Location  III: 13702192-13702246
Chromosome . Primary Identifier  III Chromosome Location . Start  13702192
Chromosome Location . End  13702246
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W06F12.1d

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE37160 LIT-1, isoform d 67.6 601 Caenorhabditis elegans
 

Other

130 RNAi

WormBase ID
WBRNAi00114300
WBRNAi00114065
WBRNAi00114144
WBRNAi00114223
WBRNAi00091348
WBRNAi00092512
WBRNAi00099003
WBRNAi00092553
WBRNAi00080203
WBRNAi00080204
WBRNAi00098863
WBRNAi00098996
WBRNAi00110469
WBRNAi00106738
WBRNAi00101463
WBRNAi00101819
WBRNAi00110472
WBRNAi00101818
WBRNAi00113185
WBRNAi00009260
WBRNAi00106749
WBRNAi00101402
WBRNAi00054898
WBRNAi00087872
WBRNAi00027889
WBRNAi00101962
WBRNAi00099953
WBRNAi00100483
WBRNAi00068461
WBRNAi00068463

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:W06F12.1d 13702192 13702246 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003048 lit-1 W06F12.1 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:W06F12.1d 13702192 13702246 1
CDS:W06F12.1d 13714572 13714676 1
CDS:W06F12.1d 13715498 13715671 1
CDS:W06F12.1d 13715750 13715851 1
CDS:W06F12.1d 13718354 13718466 1
CDS:W06F12.1d 13719826 13719941 1
CDS:W06F12.1d 13720097 13720282 1
CDS:W06F12.1d 13721690 13721796 1
CDS:W06F12.1d 13722263 13722897 1
CDS:W06F12.1d 13723251 13723463 1

1 Sequence

Length
1806

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:W06F12.1d.2 W06F12.1d.2 2832   III: 13701991-13724403
Transcript:W06F12.1d.1 W06F12.1d.1 2868   III: 13701993-13724401
Transcript:W06F12.1d.3 W06F12.1d.3 2797   III: 13702141-13724403