WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53H1.4b.1 Sequence Name  F53H1.4b.1
Length (nt)  4342   Chromosome Location  IV: 1310598-1328242
Chromosome . Primary Identifier  IV Chromosome Location . Start  1310598
Chromosome Location . End  1328242 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53H1.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018778 F53H1.4 F53H1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53H1.4b F53H1.4b 3720   IV: 1310635-1310659

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.4b.1 1310598 1328242 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon113306   62   IV: 1310598-1310659 Caenorhabditis elegans
Exon113308   57   IV: 1310742-1310798 Caenorhabditis elegans
Exon113310   181   IV: 1310897-1311077 Caenorhabditis elegans
Exon113312   274   IV: 1312127-1312400 Caenorhabditis elegans
Exon113314   396   IV: 1313021-1313416 Caenorhabditis elegans
Exon113316   237   IV: 1315287-1315523 Caenorhabditis elegans
Exon113318   252   IV: 1316880-1317131 Caenorhabditis elegans
Exon113320   510   IV: 1318078-1318587 Caenorhabditis elegans
Exon113322   291   IV: 1320135-1320425 Caenorhabditis elegans
Exon113324   104   IV: 1321063-1321166 Caenorhabditis elegans
Exon113326   281   IV: 1322092-1322372 Caenorhabditis elegans
Exon113328   279   IV: 1323186-1323464 Caenorhabditis elegans
Exon113330   554   IV: 1324948-1325501 Caenorhabditis elegans
Exon113331   864   IV: 1327379-1328242 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53H1.4b.1 1310598 1328242 1

1 Sequence

Length
4342

1 Sequence Ontology Term

Identifier Name Description
transcript