WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38A5.1a.1 Sequence Name  F38A5.1a.1
Length (nt)  2018   Chromosome Location  IV: 6579836-6582704
Chromosome . Primary Identifier  IV Chromosome Location . Start  6579836
Chromosome Location . End  6582704 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A5.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018160 odr-8 F38A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38A5.1a F38A5.1a 1770   IV: 6580040-6580190

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.1a.1 6579836 6582704 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127426   355   IV: 6579836-6580190 Caenorhabditis elegans
Exon127428   169   IV: 6580241-6580409 Caenorhabditis elegans
Exon127430   97   IV: 6580455-6580551 Caenorhabditis elegans
Exon127432   182   IV: 6580597-6580778 Caenorhabditis elegans
Exon127434   150   IV: 6581054-6581203 Caenorhabditis elegans
Exon127436   100   IV: 6581251-6581350 Caenorhabditis elegans
Exon127438   158   IV: 6581398-6581555 Caenorhabditis elegans
Exon127440   97   IV: 6581602-6581698 Caenorhabditis elegans
Exon127442   195   IV: 6581744-6581938 Caenorhabditis elegans
Exon127444   182   IV: 6581990-6582171 Caenorhabditis elegans
Exon127446   175   IV: 6582216-6582390 Caenorhabditis elegans
Exon127449   158   IV: 6582547-6582704 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.1a.1 6579836 6582704 -1

1 Sequence

Length
2018

1 Sequence Ontology Term

Identifier Name Description
transcript