WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F38A5.1a Sequence Name  F38A5.1a
Length (nt)  1770   Chromosome Location  IV: 6580040-6580190
Chromosome . Primary Identifier  IV Chromosome Location . Start  6580040
Chromosome Location . End  6580190
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A5.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE10028 ODR-8, isoform a 66.6 589 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00046671
WBRNAi00014523
WBRNAi00031939
WBRNAi00023223
WBRNAi00023457
WBRNAi00023735
WBRNAi00024022

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F38A5.1a 6580040 6580190 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018160 odr-8 F38A5.1 Caenorhabditis elegans

12 Locations


Feature . Primary Identifier
Start End Strand
CDS:F38A5.1a 6580040 6580190 -1
CDS:F38A5.1a 6580241 6580409 -1
CDS:F38A5.1a 6580455 6580551 -1
CDS:F38A5.1a 6580597 6580778 -1
CDS:F38A5.1a 6581054 6581203 -1
CDS:F38A5.1a 6581251 6581350 -1
CDS:F38A5.1a 6581398 6581555 -1
CDS:F38A5.1a 6581602 6581698 -1
CDS:F38A5.1a 6581744 6581938 -1
CDS:F38A5.1a 6581990 6582171 -1
CDS:F38A5.1a 6582216 6582390 -1
CDS:F38A5.1a 6582547 6582660 -1

1 Sequence

Length
1770

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F38A5.1a.1 F38A5.1a.1 2018   IV: 6579836-6582704