WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R11A8.7h.1 Sequence Name  R11A8.7h.1
Length (nt)  8423   Chromosome Location  IV: 10374905-10387309
Chromosome . Primary Identifier  IV Chromosome Location . Start  10374905
Chromosome Location . End  10387309 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11A8.7h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011240 mask-1 R11A8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11A8.7h R11A8.7h 4458   IV: 10381518-10381578

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R11A8.7h.1 10374905 10387309 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon141077   155   IV: 10374905-10375059 Caenorhabditis elegans
Exon141086   168   IV: 10375110-10375277 Caenorhabditis elegans
Exon141093   170   IV: 10375324-10375493 Caenorhabditis elegans
Exon141100   119   IV: 10375870-10375988 Caenorhabditis elegans
Exon141107   125   IV: 10376326-10376450 Caenorhabditis elegans
Exon141114   390   IV: 10376506-10376895 Caenorhabditis elegans
Exon141121   476   IV: 10377480-10377955 Caenorhabditis elegans
Exon141128   607   IV: 10378006-10378612 Caenorhabditis elegans
Exon141131   143   IV: 10378657-10378799 Caenorhabditis elegans
Exon141142   512   IV: 10379249-10379760 Caenorhabditis elegans
Exon141149   290   IV: 10379905-10380194 Caenorhabditis elegans
Exon141156   172   IV: 10380496-10380667 Caenorhabditis elegans
Exon141164   132   IV: 10381447-10381578 Caenorhabditis elegans
Exon141170   155   IV: 10381653-10381807 Caenorhabditis elegans
Exon141182   656   IV: 10381861-10382516 Caenorhabditis elegans
Exon141195   301   IV: 10382569-10382869 Caenorhabditis elegans
Exon141206   900   IV: 10382925-10383824 Caenorhabditis elegans
Exon141214   304   IV: 10384030-10384333 Caenorhabditis elegans
Exon141225   330   IV: 10384400-10384729 Caenorhabditis elegans
Exon141236   629   IV: 10384777-10385405 Caenorhabditis elegans
Exon141247   519   IV: 10385457-10385975 Caenorhabditis elegans
Exon141258   177   IV: 10386027-10386203 Caenorhabditis elegans
Exon141269   329   IV: 10386272-10386600 Caenorhabditis elegans
Exon141279   664   IV: 10386646-10387309 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R11A8.7h.1 10374905 10387309 1

1 Sequence

Length
8423

1 Sequence Ontology Term

Identifier Name Description
transcript