WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28D1.10.1 Sequence Name  F28D1.10.1
Length (nt)  3680   Chromosome Location  IV: 12404431-12408690
Chromosome . Primary Identifier  IV Chromosome Location . Start  12404431
Chromosome Location . End  12408690 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28D1.10.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001580 gex-3 F28D1.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28D1.10 F28D1.10 3426   IV: 12404435-12404546

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28D1.10.1 12404431 12408690 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147269   116   IV: 12404431-12404546 Caenorhabditis elegans
Exon147270   101   IV: 12404597-12404697 Caenorhabditis elegans
Exon147271   150   IV: 12404744-12404893 Caenorhabditis elegans
Exon147272   372   IV: 12404964-12405335 Caenorhabditis elegans
Exon147273   49   IV: 12405385-12405433 Caenorhabditis elegans
Exon147274   214   IV: 12405490-12405703 Caenorhabditis elegans
Exon147275   310   IV: 12405756-12406065 Caenorhabditis elegans
Exon147276   742   IV: 12406116-12406857 Caenorhabditis elegans
Exon147277   225   IV: 12406916-12407140 Caenorhabditis elegans
Exon147278   822   IV: 12407192-12408013 Caenorhabditis elegans
Exon147279   113   IV: 12408063-12408175 Caenorhabditis elegans
Exon147280   466   IV: 12408225-12408690 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28D1.10.1 12404431 12408690 1

1 Sequence

Length
3680

1 Sequence Ontology Term

Identifier Name Description
transcript