WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.21h.1 Sequence Name  Y105C5B.21h.1
Length (nt)  3350   Chromosome Location  IV: 15997835-16006357
Chromosome . Primary Identifier  IV Chromosome Location . Start  15997835
Chromosome Location . End  16006357 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.21h.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.21h Y105C5B.21h 3042   IV: 15998129-15998405

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21h.1 15997835 16006357 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162655   571   IV: 15997835-15998405 Caenorhabditis elegans
Exon162672   169   IV: 15998926-15999094 Caenorhabditis elegans
Exon162680   165   IV: 15999150-15999314 Caenorhabditis elegans
Exon162688   1104   IV: 15999764-16000867 Caenorhabditis elegans
Exon162700   180   IV: 16001755-16001934 Caenorhabditis elegans
Exon162712   432   IV: 16002467-16002898 Caenorhabditis elegans
Exon162730   181   IV: 16004382-16004562 Caenorhabditis elegans
Exon162744   338   IV: 16005253-16005590 Caenorhabditis elegans
Exon162754   126   IV: 16005925-16006050 Caenorhabditis elegans
Exon162757   84   IV: 16006274-16006357 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21h.1 15997835 16006357 -1

1 Sequence

Length
3350

1 Sequence Ontology Term

Identifier Name Description
transcript