WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39F7.2b.1 Sequence Name  C39F7.2b.1
Length (nt)  2426   Chromosome Location  V: 1223897-1235455
Chromosome . Primary Identifier  V Chromosome Location . Start  1223897
Chromosome Location . End  1235455 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39F7.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016539 madd-2 C39F7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39F7.2b C39F7.2b 2256   V: 1224046-1224139

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39F7.2b.1 1223897 1235455 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon171814   243   V: 1223897-1224139 Caenorhabditis elegans
Exon171819   100   V: 1224937-1225036 Caenorhabditis elegans
Exon171821   202   V: 1225084-1225285 Caenorhabditis elegans
Exon171823   264   V: 1225642-1225905 Caenorhabditis elegans
Exon171825   146   V: 1225962-1226107 Caenorhabditis elegans
Exon171828   157   V: 1226958-1227114 Caenorhabditis elegans
Exon171830   330   V: 1227352-1227681 Caenorhabditis elegans
Exon171833   60   V: 1233212-1233271 Caenorhabditis elegans
Exon171835   127   V: 1233320-1233446 Caenorhabditis elegans
Exon171837   436   V: 1233762-1234197 Caenorhabditis elegans
Exon171839   108   V: 1234910-1235017 Caenorhabditis elegans
Exon171841   253   V: 1235203-1235455 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39F7.2b.1 1223897 1235455 -1

1 Sequence

Length
2426

1 Sequence Ontology Term

Identifier Name Description
transcript