WormMine: Gene WBGene00271820

• WormBase Gene ID: WBGene00271820
• Gene Name: T18H9.11
• Sequence Name: T18H9.11
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by adr-1; pals-22; and pals-17 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 2745

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00271820

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

39 Allele

• gk963301
• gk964351
• gk962860
• gk964052
• gk963442
• gk963441
• WBVar01863243
• WBVar01974485
• gk242856
• gk242855
• gk242858
• gk242857
• gk242860
• gk242859
• gk242861
• WBVar02024133
• tm13179
• gk350256
• gk859636
• gk921850
• gk927847
• gk815005
• gk858807
• gk429809
• gk475785
• WBVar01417301
• gk545511
• WBVar00588757
• gk574063
• WBVar01742597

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00271820
• Start: 9199865
• End: 9202609
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_9202610..9203076
• Length (nt): 467
• Chromosome Location: V: 9202610-9203076
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in eat-2(ad465);dve-1(RNAi) animals comparing to eat-2(ad465) animals injected with empty vector.	fold change > 2, FDR < 0.01	WBPaper00067391:dve-1(RNAi)_upregulated_eat-2(ad465)
	Transcripts that showed significantly decreased expression in pals-22(jy3) comparing to in N2 animals.	limma-voom, fold change > 2, FDR < 0.05	WBPaper00064532:pals-22(jy3)_downregulated
	Transcripts that showed significantly decreased expression in pals-17(syb3980) comparing to in N2 animals at young adult stage.	Differential expression analyses were performed using limma-voom in Galaxy, adj p <= 0.05, logFC > 2	WBPaper00065984:pals-17(syb3980)_downregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_downregulated
	Transcripts that showed significantly increased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00271820
• Start: 9199865
• End: 9202609
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 2745

1 Sequence Ontology Term