WormMine: Gene WBGene00043991

• WormBase Gene ID: WBGene00043991
• Gene Name: mir-258.2
• Sequence Name: AC8.13
• Brief Description: mir-258.2 encodes a microRNA, a small non-protein coding RNA; there are two copies of mir-258 in the genome: mir-258.1 and mir-258.2; mir-258.2 is uniformly expressed from the embryonic stage to the adult stage; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-258.2 is unknown.
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by hsf-1 based on RNA-seq studies. Is affected by multi-walled carbon nanotube and Ketamine based on RNA-seq studies.
• Biotype: SO:0001265
• Genetic Position: X :-20.3177 ±0.033723
• Length (nt): 96

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00043991

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:AC8.13a	AC8.13a	21	X: 227958-227978

Other

0 CDSs

0 RNAi Result

23 Allele

• gk963652
• gk962800
• gk964065
• gk964321
• WBVar02123605
• WBVar02121671
• WBVar02123945
• WBVar02123727
• WBVar02123606
• WBVar02123607
• WBVar02121495
• WBVar02122172
• WBVar02078783
• WBVar02120538
• WBVar02122406
• WBVar02122279
• WBVar02121814
• n4797
• gk963450
• WBVar02121056
• WBVar02123425
• WBVar02122050
• gk962774

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00043991
• Start: 227953
• End: 228048
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_228049..228079
• Length (nt): 31
• Chromosome Location: X: 228049-228079
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in hsf-1(sy441) vs. in N2 day 1 adults without heat shock.	edgeR, fold change > 2, FDR < 0.05	WBPaper00066900:hsf-1(sy441)_upregulated
	Transcripts that showed significantly increased expression in animals with pan-neuronal expression of human amyloid beta (snb-1p-Amyloid-beta(1-42) + mtl-2p-GFP), comparing to in N2 animals.	edgeR p-value < 0.01 and fold change > 4.	WBPaper00061613:human-amyloid-beta_upregulated
	Genes that showed significantly increased expression after exposure to 1mg/L MWCNTs from L1 larva to young adult.	Transcripts with false discovery rate-corrected p-values < 0.05 and fold change > 2 were defined as differentially expressed.	WBPaper00049377:MWCNT_upregulated
Acidic Environment: PH 4.33 vs. PH 6.33.	Transcripts that showed significantly decreased expression after 3 hours of exposure to acidic environment (PH 4.33), comparing to control animals exposed to PH 6.33 environment.	DESeq2 (1.16.1). The Benjamini and Hochberg's approach was used to adjust the resulting P-values to control the false discovery rate. Corrected value of P < 0.05 and fold change > 2 were set as the threshold for significantly differential expression.	WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
	Transcripts that showed significantly decreased expression in animals exposed to 2.5mM ketamine since L1 larva stage.	DESeq2 (1.20.0), fold change > 2, p-value < 0.05.	WBPaper00064788:ketamine_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00043991
• Start: 227953
• End: 228048
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 96

1 Sequence Ontology Term