WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R57.1a.1 Sequence Name  R57.1a.1
Length (nt)  2406   Chromosome Location  X: 301830-308303
Chromosome . Primary Identifier  X Chromosome Location . Start  301830
Chromosome Location . End  308303 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R57.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020082 gcp-2.1 R57.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R57.1a R57.1a 2313   X: 301851-301881

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R57.1a.1 301830 308303 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon221457   52   X: 301830-301881 Caenorhabditis elegans
Exon221458   144   X: 302741-302884 Caenorhabditis elegans
Exon221461   315   X: 303656-303970 Caenorhabditis elegans
Exon221464   255   X: 304186-304440 Caenorhabditis elegans
Exon221467   137   X: 304522-304658 Caenorhabditis elegans
Exon221470   112   X: 304976-305087 Caenorhabditis elegans
Exon221473   94   X: 305134-305227 Caenorhabditis elegans
Exon221476   182   X: 305669-305850 Caenorhabditis elegans
Exon221479   145   X: 306177-306321 Caenorhabditis elegans
Exon221482   369   X: 306659-307027 Caenorhabditis elegans
Exon221486   285   X: 307615-307899 Caenorhabditis elegans
Exon221488   127   X: 307944-308070 Caenorhabditis elegans
Exon221491   189   X: 308115-308303 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R57.1a.1 301830 308303 1

1 Sequence

Length
2406

1 Sequence Ontology Term

Identifier Name Description
transcript