WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13G4.3.1 Sequence Name  T13G4.3.1
Length (nt)  4359   Chromosome Location  X: 1163159-1177172
Chromosome . Primary Identifier  X Chromosome Location . Start  1163159
Chromosome Location . End  1177172 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13G4.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020490 tmc-1 T13G4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13G4.3 T13G4.3 3858   X: 1163233-1163313

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T13G4.3.1 1163159 1177172 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon223713   155   X: 1163159-1163313 Caenorhabditis elegans
Exon223714   74   X: 1164719-1164792 Caenorhabditis elegans
Exon223716   168   X: 1167925-1168092 Caenorhabditis elegans
Exon223718   158   X: 1168150-1168307 Caenorhabditis elegans
Exon223720   107   X: 1168355-1168461 Caenorhabditis elegans
Exon223722   117   X: 1169167-1169283 Caenorhabditis elegans
Exon223724   146   X: 1169382-1169527 Caenorhabditis elegans
Exon223726   151   X: 1169579-1169729 Caenorhabditis elegans
Exon223728   65   X: 1170019-1170083 Caenorhabditis elegans
Exon223730   225   X: 1170135-1170359 Caenorhabditis elegans
Exon223732   142   X: 1170413-1170554 Caenorhabditis elegans
Exon223734   132   X: 1170928-1171059 Caenorhabditis elegans
Exon223736   168   X: 1171109-1171276 Caenorhabditis elegans
Exon223738   202   X: 1171810-1172011 Caenorhabditis elegans
Exon223740   412   X: 1172370-1172781 Caenorhabditis elegans
Exon223742   111   X: 1172857-1172967 Caenorhabditis elegans
Exon223744   126   X: 1173015-1173140 Caenorhabditis elegans
Exon223746   79   X: 1173186-1173264 Caenorhabditis elegans
Exon223748   147   X: 1173359-1173505 Caenorhabditis elegans
Exon223750   158   X: 1173585-1173742 Caenorhabditis elegans
Exon223752   89   X: 1174365-1174453 Caenorhabditis elegans
Exon223754   97   X: 1174511-1174607 Caenorhabditis elegans
Exon223756   168   X: 1174886-1175053 Caenorhabditis elegans
Exon223758   118   X: 1175169-1175286 Caenorhabditis elegans
Exon223760   144   X: 1175792-1175935 Caenorhabditis elegans
Exon223762   116   X: 1175978-1176093 Caenorhabditis elegans
Exon223764   584   X: 1176589-1177172 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T13G4.3.1 1163159 1177172 1

1 Sequence

Length
4359

1 Sequence Ontology Term

Identifier Name Description
transcript