WormMine: Gene WBGene00219959

• WormBase Gene ID: WBGene00219959
• Gene Name: F52D2.14
• Sequence Name: F52D2.14
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in CEPsoVL; germ line; pm8; and ut4 based on single-cell RNA-seq studies. Is affected by several genes including stt-3; etr-1; and kri-1 based on microarray and RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 92

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219959

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F52D2.14	F52D2.14	92	X: 1982844-1982935

Other

0 CDSs

0 RNAi Result

5 Allele

• gk963725
• gk963864
• gk786324
• gk272532
• gk272531

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219959
• Start: 1982844
• End: 1982935
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

18 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in WD485[mpk-2(ok219)] comparing to in N2.	N.A.	WBPaper00056586:mpk-2(ok219)_upregulated
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts that showed significantly altered expression in rnp-6(dh1127) animals comparing to in N2 when fed with live S. aureus.	Differentially expressed genes (DEGs) (q-value <0.05) between different samples were identified using the stringtie version 1.3.0, followed by Cufflinks version 2.2.	WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
Bacteria infection: Enterococcus faecalis OG1RF. Exposure for 16 hours.	Transcripts that showed significantly decreased expression in hpx-2(dg047) after animals were exposed to E. faecalis OG1RF for 16 hours comparing to exposure to E. Coli OP50.	Cuffcompare and Cuffdiff	WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
Heat Shock: 5 min at 34C.	Transcripts that showed significantly increased expression after 5 minutes heat shock at 34C.	DESeq2,, FDR < 0.01	WBPaper00059598:HeatShock_upregulated
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts that showed significantly decreased expression in mrps-5(RNAi) comparing to in control animals.	Fold change > 4, p-value < 0.01	WBPaper00056330:mrps-5(RNAi)_downregulated
	Single-cell RNA-Seq cell group 1_0 with unidentified tissue expression pattern.	scVI 0.6.0	WBPaper00065841:1_0
	Targets of endo-siRNA that showed significantly increased expression in BFF40[meg-3(tm4259);meg-4(ax2026);mex-5::gfp::h2b::tbb-2] comparing to in SX1263[Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] dissected gonad isolated from 1-day old adult hermaphrodites.	DESeq2, fold change > 2, FDR < 0.01	WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	Single-cell RNA-Seq cell group 57_1 expressed in germline.	scVI 0.6.0	WBPaper00065841:57_1
	Single-cell RNA-Seq cell group 13_1 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:13_1
	Single-cell RNA-Seq cell group 13_0 with unidentified tissue expression pattern.	scVI 0.6.0	WBPaper00065841:13_0
	Transcripts with expression significantly decreased by stt-3(RNAi).	DESeq2, v.1.22.2, fold change > 2, FDR < 0.05.	WBPaper00059373:stt-3(RNAi)_downregulated
	Transcripts that showed significantly increased expression in WD483[kri-1(ok1251); mpk-2(ok219)] comparing to in N2.	N.A.	WBPaper00056586:kri-1(ok1251);mpk-2(ok219)_upregulated
	Transcripts that showed significantly increased expression in hpx-2(dg047) comparing to N2 after animals were exposed to E.Coli OP50 for 16 hours.	Cuffcompare and Cuffdiff	WBPaper00056090:hpx-2(dg047)_upregulated_E.Coli
	Transcripts that showed significantly decreased expression in vit-5(RNAi) comparing to in N2 animals injected with empty vector.	DESeq R package (1.18.0), P < 0.05 and fold change > 2	WBPaper00064939:vit-5(RNAi)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219959
• Start: 1982844
• End: 1982935
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 92

1 Sequence Ontology Term