WormMine: Gene WBGene00195725

• WormBase Gene ID: WBGene00195725
• Gene Name: F48B9.9
• Sequence Name: F48B9.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by ifo-1 based on microarray studies. Is affected by glycine based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 156

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00195725

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F48B9.9	F48B9.9	156	X: 2153588-2153743

Other

0 CDSs

0 RNAi Result

9 Allele

• gk963725
• gk963864
• gk964222
• gk964221
• pkP670
• tm10856
• WBVar01600958
• gk802410
• gk576316

1 Chromosome

• WormBase ID: X
• Organism: Caenorhabditis elegans
• Length (nt): 17718942

1 Chromosome Location

• Feature . Primary Identifier: WBGene00195725
• Start: 2153588
• End: 2153743
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrX_2152649..2153587
• Length (nt): 939
• Chromosome Location: X: 2152649-2153587
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression after animals grew in 500 uM glycine from hatch till 1-day post L4 adult, comparing to untreated animals.	Differential expression was assessed using a nempirical Bayes moderated t-test within limmas linear model framework including the precision weights estimated by voom.Resulting p-values were corrected for multiple testing using the Benjamini-Hochberg false discovery rate. Curator applied threshold: fold change > 2, adjusted p-value < 0.01.	WBPaper00056330:glycine_downregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_downregulated
	Transcripts that showed significantly decreased expression in ifo-1(kc2) comparing to in N2 animals.	ANOVA, p-value < 0.05.	WBPaper00056167:ifo-1(kc2)_downregulated
Diet: supplementation of dietary fat P-80.	Transcripts that showed significantly decreased expression in animals grown with supplementation of dietary fat P-80.	Differential expression was assessed using an empirical Bayes moderated t test within limmas linear model framework including the precisio weights estimated by voom. Fold change > 2, FDR < 0.05	WBPaper00062534:fat-P-80_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00195725
• Start: 2153588
• End: 2153743
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 156

1 Sequence Ontology Term