WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T02C5.5n.1 Sequence Name  T02C5.5n.1
Length (nt)  6384   Chromosome Location  X: 2711628-2758027
Chromosome . Primary Identifier  X Chromosome Location . Start  2711628
Chromosome Location . End  2758027 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T02C5.5n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006742 unc-2 T02C5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T02C5.5n T02C5.5n 6384   X: 2711628-2711798

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5n.1 2711628 2758027 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

32 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon226482   171   X: 2711628-2711798 Caenorhabditis elegans
Exon226496   185   X: 2712355-2712539 Caenorhabditis elegans
Exon226510   150   X: 2712582-2712731 Caenorhabditis elegans
Exon226524   291   X: 2712787-2713077 Caenorhabditis elegans
Exon226538   121   X: 2713276-2713396 Caenorhabditis elegans
Exon226557   88   X: 2715092-2715179 Caenorhabditis elegans
Exon226571   101   X: 2716008-2716108 Caenorhabditis elegans
Exon226585   213   X: 2716157-2716369 Caenorhabditis elegans
Exon226603   89   X: 2716915-2717003 Caenorhabditis elegans
Exon226618   311   X: 2717108-2717418 Caenorhabditis elegans
Exon226633   653   X: 2717465-2718117 Caenorhabditis elegans
Exon226648   783   X: 2718804-2719586 Caenorhabditis elegans
Exon226663   106   X: 2719637-2719742 Caenorhabditis elegans
Exon226678   107   X: 2720170-2720276 Caenorhabditis elegans
Exon226693   287   X: 2720819-2721105 Caenorhabditis elegans
Exon226708   213   X: 2721155-2721367 Caenorhabditis elegans
Exon226723   121   X: 2721418-2721538 Caenorhabditis elegans
Exon226738   428   X: 2721584-2722011 Caenorhabditis elegans
Exon226753   128   X: 2722059-2722186 Caenorhabditis elegans
Exon226768   58   X: 2722642-2722699 Caenorhabditis elegans
Exon226773   227   X: 2723235-2723461 Caenorhabditis elegans
Exon226798   90   X: 2724083-2724172 Caenorhabditis elegans
Exon226813   193   X: 2724219-2724411 Caenorhabditis elegans
Exon226828   273   X: 2724464-2724736 Caenorhabditis elegans
Exon226843   128   X: 2724824-2724951 Caenorhabditis elegans
Exon226858   320   X: 2725442-2725761 Caenorhabditis elegans
Exon226871   97   X: 2730538-2730634 Caenorhabditis elegans
Exon226890   87   X: 2743655-2743741 Caenorhabditis elegans
Exon226894   170   X: 2747807-2747976 Caenorhabditis elegans
Exon226899   65   X: 2756287-2756351 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T02C5.5n.1 2711628 2758027 -1

1 Sequence

Length
6384

1 Sequence Ontology Term

Identifier Name Description
transcript