WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52B10.1a.1 Sequence Name  F52B10.1a.1
Length (nt)  6419   Chromosome Location  X: 2909527-2918043
Chromosome . Primary Identifier  X Chromosome Location . Start  2909527
Chromosome Location . End  2918043 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52B10.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003776 nmy-1 F52B10.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52B10.1a F52B10.1a 5892   X: 2909556-2909686

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F52B10.1a.1 2909527 2918043 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227170   160   X: 2909527-2909686 Caenorhabditis elegans
Exon227172   193   X: 2909735-2909927 Caenorhabditis elegans
Exon227174   157   X: 2909975-2910131 Caenorhabditis elegans
Exon227176   152   X: 2910189-2910340 Caenorhabditis elegans
Exon227178   21   X: 2910423-2910443 Caenorhabditis elegans
Exon227179   93   X: 2911111-2911203 Caenorhabditis elegans
Exon227181   163   X: 2911259-2911421 Caenorhabditis elegans
Exon227183   144   X: 2911889-2912032 Caenorhabditis elegans
Exon227185   474   X: 2912082-2912555 Caenorhabditis elegans
Exon227187   1121   X: 2912610-2913730 Caenorhabditis elegans
Exon227189   195   X: 2913787-2913981 Caenorhabditis elegans
Exon227191   578   X: 2914027-2914604 Caenorhabditis elegans
Exon227193   115   X: 2914751-2914865 Caenorhabditis elegans
Exon227195   312   X: 2914916-2915227 Caenorhabditis elegans
Exon227197   690   X: 2915276-2915965 Caenorhabditis elegans
Exon227199   1056   X: 2916020-2917075 Caenorhabditis elegans
Exon227201   161   X: 2917153-2917313 Caenorhabditis elegans
Exon227203   101   X: 2917357-2917457 Caenorhabditis elegans
Exon227205   533   X: 2917511-2918043 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F52B10.1a.1 2909527 2918043 1

1 Sequence

Length
6419

1 Sequence Ontology Term

Identifier Name Description
transcript