WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C15C7.2.1 Sequence Name  C15C7.2.1
Length (nt)  2068   Chromosome Location  X: 3159940-3164424
Chromosome . Primary Identifier  X Chromosome Location . Start  3159940
Chromosome Location . End  3164424 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C15C7.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002220 gcc-1 C15C7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C15C7.2 C15C7.2 1785   X: 3159956-3160034

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C15C7.2.1 3159940 3164424 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon227807   95   X: 3159940-3160034 Caenorhabditis elegans
Exon227808   86   X: 3160079-3160164 Caenorhabditis elegans
Exon227809   105   X: 3160220-3160324 Caenorhabditis elegans
Exon227810   213   X: 3160373-3160585 Caenorhabditis elegans
Exon227811   186   X: 3160639-3160824 Caenorhabditis elegans
Exon227812   108   X: 3160871-3160978 Caenorhabditis elegans
Exon227813   225   X: 3161443-3161667 Caenorhabditis elegans
Exon227814   269   X: 3161715-3161983 Caenorhabditis elegans
Exon227815   222   X: 3162029-3162250 Caenorhabditis elegans
Exon227816   119   X: 3163813-3163931 Caenorhabditis elegans
Exon227817   440   X: 3163985-3164424 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C15C7.2.1 3159940 3164424 1

1 Sequence

Length
2068

1 Sequence Ontology Term

Identifier Name Description
transcript