WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13H2.5a.1 Sequence Name  T13H2.5a.1
Length (nt)  7651   Chromosome Location  X: 4596011-4605928
Chromosome . Primary Identifier  X Chromosome Location . Start  4596011
Chromosome Location . End  4605928 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13H2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020496 spat-3 T13H2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13H2.5a T13H2.5a 7431   X: 4596199-4596384

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T13H2.5a.1 4596011 4605928 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon231127   374   X: 4596011-4596384 Caenorhabditis elegans
Exon231129   74   X: 4596435-4596508 Caenorhabditis elegans
Exon231131   109   X: 4596565-4596673 Caenorhabditis elegans
Exon231133   1243   X: 4596723-4597965 Caenorhabditis elegans
Exon231135   470   X: 4598010-4598479 Caenorhabditis elegans
Exon231137   54   X: 4598614-4598667 Caenorhabditis elegans
Exon231139   173   X: 4598750-4598922 Caenorhabditis elegans
Exon231141   156   X: 4598972-4599127 Caenorhabditis elegans
Exon231144   1009   X: 4599176-4600184 Caenorhabditis elegans
Exon231145   381   X: 4600231-4600611 Caenorhabditis elegans
Exon231146   150   X: 4601295-4601444 Caenorhabditis elegans
Exon231147   245   X: 4601983-4602227 Caenorhabditis elegans
Exon231148   711   X: 4602281-4602991 Caenorhabditis elegans
Exon231149   369   X: 4603041-4603409 Caenorhabditis elegans
Exon231150   615   X: 4603456-4604070 Caenorhabditis elegans
Exon231151   958   X: 4604126-4605083 Caenorhabditis elegans
Exon231152   123   X: 4605133-4605255 Caenorhabditis elegans
Exon231153   351   X: 4605303-4605653 Caenorhabditis elegans
Exon231154   86   X: 4605843-4605928 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T13H2.5a.1 4596011 4605928 -1

1 Sequence

Length
7651

1 Sequence Ontology Term

Identifier Name Description
transcript