WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41A3.1a.1 Sequence Name  C41A3.1a.1
Length (nt)  23299   Chromosome Location  X: 5413810-5441958
Chromosome . Primary Identifier  X Chromosome Location . Start  5413810
Chromosome Location . End  5441958 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41A3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016558 pks-1 C41A3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41A3.1a C41A3.1a 23259   X: 5413810-5413895

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1a.1 5413810 5441958 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

30 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon233697   86   X: 5413810-5413895 Caenorhabditis elegans
Exon233699   121   X: 5414257-5414377 Caenorhabditis elegans
Exon233702   215   X: 5414426-5414640 Caenorhabditis elegans
Exon233704   153   X: 5414996-5415148 Caenorhabditis elegans
Exon233706   238   X: 5415193-5415430 Caenorhabditis elegans
Exon233708   149   X: 5415830-5415978 Caenorhabditis elegans
Exon233710   2036   X: 5416022-5418057 Caenorhabditis elegans
Exon233714   294   X: 5418102-5418395 Caenorhabditis elegans
Exon233716   89   X: 5418440-5418528 Caenorhabditis elegans
Exon233718   122   X: 5418579-5418700 Caenorhabditis elegans
Exon233720   342   X: 5419026-5419367 Caenorhabditis elegans
Exon233722   1393   X: 5419414-5420806 Caenorhabditis elegans
Exon233724   574   X: 5421268-5421841 Caenorhabditis elegans
Exon233726   312   X: 5421911-5422222 Caenorhabditis elegans
Exon233728   132   X: 5422965-5423096 Caenorhabditis elegans
Exon233730   1982   X: 5423143-5425124 Caenorhabditis elegans
Exon233732   165   X: 5425574-5425738 Caenorhabditis elegans
Exon233734   142   X: 5425785-5425926 Caenorhabditis elegans
Exon233736   1211   X: 5425976-5427186 Caenorhabditis elegans
Exon233738   216   X: 5427666-5427881 Caenorhabditis elegans
Exon233740   1504   X: 5427937-5429440 Caenorhabditis elegans
Exon233742   202   X: 5429485-5429686 Caenorhabditis elegans
Exon233745   10633   X: 5429734-5440366 Caenorhabditis elegans
Exon233748   246   X: 5440418-5440663 Caenorhabditis elegans
Exon233750   174   X: 5440708-5440881 Caenorhabditis elegans
Exon233752   186   X: 5441194-5441379 Caenorhabditis elegans
Exon233754   48   X: 5441425-5441472 Caenorhabditis elegans
Exon233756   110   X: 5441521-5441630 Caenorhabditis elegans
Exon233758   85   X: 5441678-5441762 Caenorhabditis elegans
Exon233760   139   X: 5441820-5441958 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C41A3.1a.1 5413810 5441958 1

1 Sequence

Length
23299

1 Sequence Ontology Term

Identifier Name Description
transcript