WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49E10.2a.1 Sequence Name  F49E10.2a.1
Length (nt)  2424   Chromosome Location  X: 5890406-5893898
Chromosome . Primary Identifier  X Chromosome Location . Start  5890406
Chromosome Location . End  5893898 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49E10.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018640 F49E10.2 F49E10.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E10.2a F49E10.2a 2373   X: 5890457-5890607

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.2a.1 5890406 5893898 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235239   202   X: 5890406-5890607 Caenorhabditis elegans
Exon235240   125   X: 5890664-5890788 Caenorhabditis elegans
Exon235242   252   X: 5890858-5891109 Caenorhabditis elegans
Exon235244   177   X: 5891155-5891331 Caenorhabditis elegans
Exon235247   290   X: 5891932-5892221 Caenorhabditis elegans
Exon235249   545   X: 5892272-5892816 Caenorhabditis elegans
Exon235251   88   X: 5892861-5892948 Caenorhabditis elegans
Exon235253   79   X: 5893005-5893083 Caenorhabditis elegans
Exon235255   322   X: 5893137-5893458 Caenorhabditis elegans
Exon235257   167   X: 5893506-5893672 Caenorhabditis elegans
Exon235260   177   X: 5893722-5893898 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49E10.2a.1 5890406 5893898 1

1 Sequence

Length
2424

1 Sequence Ontology Term

Identifier Name Description
transcript