WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C45B2.7.1 Sequence Name  C45B2.7.1
Length (nt)  3121   Chromosome Location  X: 6060758-6065986
Chromosome . Primary Identifier  X Chromosome Location . Start  6060758
Chromosome Location . End  6065986 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C45B2.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004219 ptr-4 C45B2.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C45B2.7 C45B2.7 2883   X: 6060975-6061096

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C45B2.7.1 6060758 6065986 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon235658   339   X: 6060758-6061096 Caenorhabditis elegans
Exon235659   337   X: 6061145-6061481 Caenorhabditis elegans
Exon235660   287   X: 6061530-6061816 Caenorhabditis elegans
Exon235661   273   X: 6061868-6062140 Caenorhabditis elegans
Exon235662   198   X: 6062597-6062794 Caenorhabditis elegans
Exon235663   196   X: 6062838-6063033 Caenorhabditis elegans
Exon235664   367   X: 6063088-6063454 Caenorhabditis elegans
Exon235665   123   X: 6063578-6063700 Caenorhabditis elegans
Exon235666   407   X: 6063755-6064161 Caenorhabditis elegans
Exon235667   104   X: 6064209-6064312 Caenorhabditis elegans
Exon235668   271   X: 6065407-6065677 Caenorhabditis elegans
Exon235669   150   X: 6065723-6065872 Caenorhabditis elegans
Exon235670   69   X: 6065918-6065986 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C45B2.7.1 6060758 6065986 -1

1 Sequence

Length
3121

1 Sequence Ontology Term

Identifier Name Description
transcript